File: C:/Users/fred/anaconda3/Lib/site-packages/datashader/tests/test_layout.py
from __future__ import annotations
import pytest
import numpy as np
import pandas as pd
from datashader.bundling import directly_connect_edges, hammer_bundle
from datashader.layout import circular_layout, forceatlas2_layout, random_layout
skimage = pytest.importorskip("skimage")
@pytest.fixture
def nodes():
# Four nodes arranged at the corners of a 200x200 square with one node
# at the center
nodes_df = pd.DataFrame({'id': np.arange(5),
'x': [0., -100., 100., -100., 100.],
'y': [0., 100., 100., -100., -100.]})
return nodes_df.set_index('id')
@pytest.fixture
def nodes_without_positions():
nodes_df = pd.DataFrame({'id': np.arange(5)})
return nodes_df.set_index('id')
@pytest.fixture
def edges():
# Four edges originating from the center node and connected to each
# corner
edges_df = pd.DataFrame({'id': np.arange(4),
'source': np.zeros(4, dtype=np.int64),
'target': np.arange(1, 5)})
return edges_df.set_index('id')
@pytest.fixture
def weighted_edges():
# Four weighted edges originating from the center node and connected
# to each corner
edges_df = pd.DataFrame({'id': np.arange(4),
'source': np.zeros(4, dtype=np.int64),
'target': np.arange(1, 5),
'weight': np.ones(4)})
return edges_df.set_index('id')
@pytest.mark.parametrize('bundle', [directly_connect_edges, hammer_bundle])
@pytest.mark.parametrize('layout', [random_layout, circular_layout, forceatlas2_layout])
def test_renamed_columns(nodes, weighted_edges, bundle, layout):
nodes = nodes.rename(columns={'x': 'xx', 'y': 'yy'})
edges = weighted_edges.rename(columns={'source': 'src', 'target': 'dst', 'weight': 'w'})
node_positions = layout(nodes, edges, x='xx', y='yy', source='src', target='dst', weight='w')
df = bundle(node_positions, edges, x='xx', y='yy', source='src', target='dst', weight='w')
assert 'xx' in df and 'x' not in df
assert 'yy' in df and 'y' not in df
assert 'w' in df and 'weight' not in df
def test_forceatlas2_positioned_nodes_with_unweighted_edges(nodes, edges):
df = forceatlas2_layout(nodes, edges)
assert len(nodes) == len(df)
assert not df.equals(nodes)
def test_forceatlas2_positioned_nodes_with_weighted_edges(nodes, weighted_edges):
df = forceatlas2_layout(nodes, weighted_edges)
assert len(nodes) == len(df)
assert not df.equals(nodes)
def test_forceatlas2_unpositioned_nodes_with_unweighted_edges(nodes_without_positions, edges):
df = forceatlas2_layout(nodes_without_positions, edges)
assert len(nodes_without_positions) == len(df)
assert not df.equals(nodes_without_positions)
def test_forceatlas2_unpositioned_nodes_with_weighted_edges(nodes_without_positions,
weighted_edges):
df = forceatlas2_layout(nodes_without_positions, weighted_edges)
assert len(nodes_without_positions) == len(df)
assert not df.equals(nodes_without_positions)
def test_random_layout(nodes_without_positions, edges):
expected_x = [0.417022004703, 0.000114374817, 0.146755890817, 0.186260211378, 0.396767474231]
expected_y = [0.720324493442, 0.302332572632, 0.092338594769, 0.345560727043, 0.538816734003]
df = random_layout(nodes_without_positions, edges, seed=1)
assert np.allclose(df['x'], expected_x)
assert np.allclose(df['y'], expected_y)
def test_uniform_circular_layout(nodes_without_positions, edges):
expected_x = [1.0, 0.654508497187, 0.095491502813, 0.095491502813, 0.654508497187]
expected_y = [0.5, 0.975528258148, 0.793892626146, 0.206107373854, 0.024471741852]
df = circular_layout(nodes_without_positions, edges)
assert np.allclose(df['x'], expected_x)
assert np.allclose(df['y'], expected_y)
def test_random_circular_layout(nodes_without_positions, edges):
expected_x = [0.066430214119, 0.407310906119, 0.999999870890, 0.338539010529, 0.802076237875]
expected_y = [0.749032609855, 0.008666374166, 0.500359319055, 0.973212794501, 0.898434369139]
df = circular_layout(nodes_without_positions, edges, uniform=False, seed=1)
assert np.allclose(df['x'], expected_x)
assert np.allclose(df['y'], expected_y)