File: C:/Users/fred/anaconda3/Lib/site-packages/skimage/segmentation/tests/test_chan_vese.py
import numpy as np
import pytest
from numpy.testing import assert_array_equal
from skimage._shared.utils import _supported_float_type
from skimage.segmentation import chan_vese
@pytest.mark.parametrize('dtype', [np.float32, np.float64])
def test_chan_vese_flat_level_set(dtype):
# because the algorithm evolves the level set around the
# zero-level, it the level-set has no zero level, the algorithm
# will not produce results in theory. However, since a continuous
# approximation of the delta function is used, the algorithm
# still affects the entirety of the level-set. Therefore with
# infinite time, the segmentation will still converge.
img = np.zeros((10, 10), dtype=dtype)
img[3:6, 3:6] = 1
ls = np.full((10, 10), 1000, dtype=dtype)
result = chan_vese(img, mu=0.0, tol=1e-3, init_level_set=ls)
assert_array_equal(result.astype(float), np.ones((10, 10)))
result = chan_vese(img, mu=0.0, tol=1e-3, init_level_set=-ls)
assert_array_equal(result.astype(float), np.zeros((10, 10)))
def test_chan_vese_small_disk_level_set():
img = np.zeros((10, 10))
img[3:6, 3:6] = 1
result = chan_vese(img, mu=0.0, tol=1e-3, init_level_set="small disk")
assert_array_equal(result.astype(float), img)
def test_chan_vese_simple_shape():
img = np.zeros((10, 10))
img[3:6, 3:6] = 1
result = chan_vese(img, mu=0.0, tol=1e-8).astype(float)
assert_array_equal(result, img)
@pytest.mark.parametrize('dtype', [np.uint8, np.float16, np.float32, np.float64])
def test_chan_vese_extended_output(dtype):
img = np.zeros((10, 10), dtype=dtype)
img[3:6, 3:6] = 1
result = chan_vese(img, mu=0.0, tol=1e-8, extended_output=True)
float_dtype = _supported_float_type(dtype)
assert result[1].dtype == float_dtype
assert all(arr.dtype == float_dtype for arr in result[2])
assert_array_equal(len(result), 3)
def test_chan_vese_remove_noise():
ref = np.zeros((10, 10))
ref[1:6, 1:6] = np.array(
[
[0, 1, 1, 1, 0],
[1, 1, 1, 1, 1],
[1, 1, 1, 1, 1],
[1, 1, 1, 1, 1],
[0, 1, 1, 1, 0],
]
)
img = ref.copy()
img[8, 3] = 1
result = chan_vese(
img, mu=0.3, tol=1e-3, max_num_iter=100, dt=10, init_level_set="disk"
).astype(float)
assert_array_equal(result, ref)
def test_chan_vese_incorrect_image_type():
img = np.zeros((10, 10, 3))
ls = np.zeros((10, 9))
with pytest.raises(ValueError):
chan_vese(img, mu=0.0, init_level_set=ls)
def test_chan_vese_gap_closing():
ref = np.zeros((20, 20))
ref[8:15, :] = np.ones((7, 20))
img = ref.copy()
img[:, 6] = np.zeros(20)
result = chan_vese(
img, mu=0.7, tol=1e-3, max_num_iter=1000, dt=1000, init_level_set="disk"
).astype(float)
assert_array_equal(result, ref)
def test_chan_vese_incorrect_level_set():
img = np.zeros((10, 10))
ls = np.zeros((10, 9))
with pytest.raises(ValueError):
chan_vese(img, mu=0.0, init_level_set=ls)
with pytest.raises(ValueError):
chan_vese(img, mu=0.0, init_level_set="a")
def test_chan_vese_blank_image():
img = np.zeros((10, 10))
level_set = np.random.rand(10, 10)
ref = level_set > 0
result = chan_vese(img, mu=0.0, tol=0.0, init_level_set=level_set)
assert_array_equal(result, ref)