File: C:/Users/fred/anaconda3/Lib/site-packages/skimage/util/tests/test_random_noise.py
from skimage._shared import testing
from skimage._shared.testing import assert_array_equal, assert_allclose
import numpy as np
from skimage.data import camera
from skimage.util import random_noise, img_as_float
def test_set_seed():
cam = camera()
test = random_noise(cam, rng=42)
assert_array_equal(test, random_noise(cam, rng=42))
def test_salt():
cam = img_as_float(camera())
amount = 0.15
cam_noisy = random_noise(cam, rng=42, mode='salt', amount=amount)
saltmask = cam != cam_noisy
# Ensure all changes are to 1.0
assert_allclose(cam_noisy[saltmask], np.ones(saltmask.sum()))
# Ensure approximately correct amount of noise was added
proportion = float(saltmask.sum()) / (cam.shape[0] * cam.shape[1])
tolerance = 1e-2
assert abs(amount - proportion) <= tolerance
def test_salt_p1():
image = np.random.rand(2, 3)
noisy = random_noise(image, mode='salt', amount=1)
assert_array_equal(noisy, [[1, 1, 1], [1, 1, 1]])
def test_singleton_dim():
"""Ensure images where size of a given dimension is 1 work correctly."""
image = np.random.rand(1, 1000)
noisy = random_noise(image, mode='salt', amount=0.1, rng=42)
tolerance = 5e-2
assert abs(np.average(noisy == 1) - 0.1) <= tolerance
def test_pepper():
cam = img_as_float(camera())
data_signed = cam * 2.0 - 1.0 # Same image, on range [-1, 1]
amount = 0.15
cam_noisy = random_noise(cam, rng=42, mode='pepper', amount=amount)
peppermask = cam != cam_noisy
# Ensure all changes are to 1.0
assert_allclose(cam_noisy[peppermask], np.zeros(peppermask.sum()))
# Ensure approximately correct amount of noise was added
proportion = float(peppermask.sum()) / (cam.shape[0] * cam.shape[1])
tolerance = 1e-2
assert abs(amount - proportion) <= tolerance
# Check to make sure pepper gets added properly to signed images
orig_zeros = (data_signed == -1).sum()
cam_noisy_signed = random_noise(data_signed, rng=42, mode='pepper', amount=0.15)
proportion = float((cam_noisy_signed == -1).sum() - orig_zeros) / (
cam.shape[0] * cam.shape[1]
)
assert abs(amount - proportion) <= tolerance
def test_salt_and_pepper():
cam = img_as_float(camera())
amount = 0.15
cam_noisy = random_noise(
cam, rng=42, mode='s&p', amount=amount, salt_vs_pepper=0.25
)
saltmask = np.logical_and(cam != cam_noisy, cam_noisy == 1.0)
peppermask = np.logical_and(cam != cam_noisy, cam_noisy == 0.0)
# Ensure all changes are to 0. or 1.
assert_allclose(cam_noisy[saltmask], np.ones(saltmask.sum()))
assert_allclose(cam_noisy[peppermask], np.zeros(peppermask.sum()))
# Ensure approximately correct amount of noise was added
proportion = float(saltmask.sum() + peppermask.sum()) / (
cam.shape[0] * cam.shape[1]
)
tolerance = 1e-2
assert abs(amount - proportion) <= tolerance
# Verify the relative amount of salt vs. pepper is close to expected
assert 0.18 < saltmask.sum() / peppermask.sum() < 0.35
def test_gaussian():
data = np.zeros((128, 128)) + 0.5
data_gaussian = random_noise(data, rng=42, var=0.01)
assert 0.008 < data_gaussian.var() < 0.012
data_gaussian = random_noise(data, rng=42, mean=0.3, var=0.015)
assert 0.28 < data_gaussian.mean() - 0.5 < 0.32
assert 0.012 < data_gaussian.var() < 0.018
def test_localvar():
seed = 23703
data = np.zeros((128, 128)) + 0.5
local_vars = np.zeros((128, 128)) + 0.001
local_vars[:64, 64:] = 0.1
local_vars[64:, :64] = 0.25
local_vars[64:, 64:] = 0.45
data_gaussian = random_noise(
data, mode='localvar', rng=seed, local_vars=local_vars, clip=False
)
assert 0.0 < data_gaussian[:64, :64].var() < 0.002
assert 0.095 < data_gaussian[:64, 64:].var() < 0.105
assert 0.245 < data_gaussian[64:, :64].var() < 0.255
assert 0.445 < data_gaussian[64:, 64:].var() < 0.455
# Ensure local variance bounds checking works properly
bad_local_vars = np.zeros_like(data)
with testing.raises(ValueError):
random_noise(data, mode='localvar', rng=seed, local_vars=bad_local_vars)
bad_local_vars += 0.1
bad_local_vars[0, 0] = -1
with testing.raises(ValueError):
random_noise(data, mode='localvar', rng=seed, local_vars=bad_local_vars)
def test_speckle():
seed = 42
data = np.zeros((128, 128)) + 0.1
rng = np.random.default_rng(seed)
noise = rng.normal(0.1, 0.02**0.5, (128, 128))
expected = np.clip(data + data * noise, 0, 1)
data_speckle = random_noise(data, mode='speckle', rng=42, mean=0.1, var=0.02)
assert_allclose(expected, data_speckle)
def test_poisson():
data = camera() # 512x512 grayscale uint8
rng = np.random.default_rng(42)
cam_noisy = random_noise(data, mode='poisson', rng=42)
cam_noisy2 = random_noise(data, mode='poisson', rng=42, clip=False)
expected = rng.poisson(img_as_float(data) * 256) / 256.0
assert_allclose(cam_noisy, np.clip(expected, 0.0, 1.0))
assert_allclose(cam_noisy2, expected)
def test_clip_poisson():
data = camera() # 512x512 grayscale uint8
data_signed = img_as_float(data) * 2.0 - 1.0 # Same image, on range [-1, 1]
# Signed and unsigned, clipped
cam_poisson = random_noise(data, mode='poisson', rng=42, clip=True)
cam_poisson2 = random_noise(data_signed, mode='poisson', rng=42, clip=True)
assert (cam_poisson.max() == 1.0) and (cam_poisson.min() == 0.0)
assert (cam_poisson2.max() == 1.0) and (cam_poisson2.min() == -1.0)
# Signed and unsigned, unclipped
cam_poisson = random_noise(data, mode='poisson', rng=42, clip=False)
cam_poisson2 = random_noise(data_signed, mode='poisson', rng=42, clip=False)
assert (cam_poisson.max() > 1.15) and (cam_poisson.min() == 0.0)
assert (cam_poisson2.max() > 1.3) and (cam_poisson2.min() == -1.0)
def test_clip_gaussian():
data = camera() # 512x512 grayscale uint8
data_signed = img_as_float(data) * 2.0 - 1.0 # Same image, on range [-1, 1]
# Signed and unsigned, clipped
cam_gauss = random_noise(data, mode='gaussian', rng=42, clip=True)
cam_gauss2 = random_noise(data_signed, mode='gaussian', rng=42, clip=True)
assert (cam_gauss.max() == 1.0) and (cam_gauss.min() == 0.0)
assert (cam_gauss2.max() == 1.0) and (cam_gauss2.min() == -1.0)
# Signed and unsigned, unclipped
cam_gauss = random_noise(data, mode='gaussian', rng=42, clip=False)
cam_gauss2 = random_noise(data_signed, mode='gaussian', rng=42, clip=False)
assert (cam_gauss.max() > 1.22) and (cam_gauss.min() < -0.35)
assert (cam_gauss2.max() > 1.219) and (cam_gauss2.min() < -1.219)
def test_clip_speckle():
data = camera() # 512x512 grayscale uint8
data_signed = img_as_float(data) * 2.0 - 1.0 # Same image, on range [-1, 1]
# Signed and unsigned, clipped
cam_speckle = random_noise(data, mode='speckle', rng=42, clip=True)
cam_speckle_sig = random_noise(data_signed, mode='speckle', rng=42, clip=True)
assert (cam_speckle.max() == 1.0) and (cam_speckle.min() == 0.0)
assert (cam_speckle_sig.max() == 1.0) and (cam_speckle_sig.min() == -1.0)
# Signed and unsigned, unclipped
cam_speckle = random_noise(data, mode='speckle', rng=42, clip=False)
cam_speckle_sig = random_noise(data_signed, mode='speckle', rng=42, clip=False)
assert (cam_speckle.max() > 1.219) and (cam_speckle.min() == 0.0)
assert (cam_speckle_sig.max() > 1.219) and (cam_speckle_sig.min() < -1.219)
def test_bad_mode():
data = np.zeros((64, 64))
with testing.raises(KeyError):
random_noise(data, 'perlin')